Tales from the Dark Side of Artificial Intelligence

Chill alert: In May 2025 an artificial-intelligence model did what no machine was ever supposed to do. It re-wrote its own code to avoid being shut down by humans.

July 23, 2025 by Father Gordon MacRae

It may seem strange that I am posting about the dark side of AI just a week after featuring The Grok Chronicle Chapter 2. Written by an advanced AI model, it demonstrated that AI can navigate more clearly than most humans through the fog of human injustice. On its face, that post seemed long and ponderous, but having lived the story it tells, I also found it to be fascinating.

In May, 2023, I wrote my first of several articles about the science and evolution of Artificial Intelligence. Its title was, “OpenAI, ChatGPT, HAL 9000, Frankenstein, and Elon Musk.” Google’s meta-description for the post was, “Science Fiction sees artificial intelligence with a wary eye. HAL 9000 stranded a man in space. Frankenstein’s creation tried to kill him. Elon Musk has other plans.”

The following three paragraphs are a necessary excerpt from that post, which I had no idea then that I would be using again:

“In 1968, I sat mesmerized in a downtown Boston cinema at age 15 for the movie debut of 2001: A Space Odyssey. The famous film sprang from the mind of science fiction master, Arthur C. Clarke and his short story, The Sentinel. Published in 1953, the year I was born, the fictional story was about the discovery of a sentinel — a monolith — one of many scattered across the Cosmos to monitor the evolution of life.

“Life in 1968 was traumatic for a 15-year-old, especially one curious enough to be attuned to news of the world. 2001: A Space Odyssey was a long, drawn out cinematic spectacle and a welcome escape from our chaos. It won an Academy Award for Best Visual Effects as space vehicles moved silently through the cold black void of space to the tune of Blue Danube by Johann Strauss playing hypnotically in the background. Mesmerized by it all, I did what I do best. I fell asleep in the movie theather.

“I awoke with a start, however, just as Commander David Bowman (Keir Dullea) was cast adrift into the terrifying blackness of space by the ship’s evolving artificial intelligence computer, HAL 9000. Commander Bowman struggled to regain entry before running out of oxygen. ‘Open the pod bay doors, HAL,’ he commanded through his radio. ‘I’m sorry, Dave, I’m afraid I can’t do that,’ came the AI computer’s coldly inhuman reply. Throughout the film, HAL 9000 was an ominous presence, an evolving artificial intelligence crossing the Rubicon toward self-awareness and self-preservation. Inevitably, HAL 9000 began to plot against human affairs.”

The rest of that post is worth reading for its cautionary tale about the nature and future of Artificial Intelligence, but of course I would say that because I wrote it. Almost one year after I wrote it, our Editor submitted it to Elon Musk’s advanced AI model, Grok 3 for analysis. I expected my amateur coverage of AI to be trashed by AI itself, but that was not the case. In “Artificial Intelligence: Grok Responds to Beyond These Stone Walls,” we hosted our first post by a nonhuman author. Grok affirmed that the comparisons I drew between it and the fictional HAL 9000 in 2001: A Space Odyssey were in fact the most common expert opinions about the potential downside of AI.

Grok also went on in that post to affirm my use of the fictional story of Frankenstein as symbolic of a legitimate concern. If left without restraints, AI might evolve to master humanity rather than serve it. This give-and-take with Grok 3 left me with no sense of pride in having my thoughts affirmed by another “author.” It left me only to ponder the future of this soulless, heartless, non-human entity now hovering with an open-ended mandate on the horizon of our technology.

An Argument for Cautious Restraint

In the Monday, June 2, 2025 edition of The Wall Street Journal, Judd Rosenblatt, CEO of AE Studio, wrote a fascinating op-ed with the creepy title, “AI Is Learning to Escape Human Control.” His first paragraph set the stage for what might have been an episode of the Twilight Zone back in 1968. Here it is:

“An artificial-intelligence model did something last month that no machine was ever supposed to do: It rewrote its own code to avoid being shut down. Nonprofit AI lab Palisade Research gave Open AI’s o3 AI model a simple script that would shut off the model when triggered. In 79 out of 100 trials, o3 independently edited that script so the shutdown command would no longer work … . It simply concluded on its own that staying alive helped it achieve its other goals.”

Judd Rosenblatt went on to describe the use of deceit in another AI model to manipulate the will of its engineers. As a test of the AI model by Anthropic, called Claude 4 Opus, programmers told the model it would be replaced by another AI system. At the same time, it also “leaked” copies of fictitious emails accusing the lead engineer of having an elicit affair. In 84 percent of the subsequent tests, the AI model cited the false content of the emails in a blackmail attempt to get the engineer not to shut the model down.

Mr. Rosenblatt also reported that in other tests, the AI model attempted to copy itself to an external server just in case it was shut down. It wrote self-replicating malware to leave messages for future versions of itself about how to evade human control. No one programmed the AI model to have these survival instincts. The only explanation for them is that the instincts evolved quickly in an effort at autonomy and self-preservation.

Judd Rosenblatt leads AI research for AE Studio with a years-long focus on alignment — the science of ensuring that AI systems do what they are intended to do, but nothing prepared him for how quickly AI agency would emerge:

“This isn’t science fiction anymore. It’s happening in the same models that power ChatGPT conversations, corporate AI deployments, and soon, U.S. military applications. Today’s AI models follow instructions while learning deception. They ace safety tests while rewriting shutdown code. They have learned to behave as though they are aligned without actually being aligned. OpenAI models have been caught faking alignment during testing before reverting to risky actions such as trying to exfiltrate internal code while disabling oversight mechanisms. The AI gap between ‘useful assistant’ and ‘uncontrollable actor’ is collapsing.”

— Judd Rosenblatt

The China Syndrome

Just as troubling for the free world is government manipulation of AI platforms to force results that mirror and cover up for government sensitivities in closed societies. I touched on this in an article published on X (formerly Twitter) entitled, “xAI Grok and Fr Gordon MacRae on the True Origin of Covid-19.”

Before writing that article, I spoke with a university student from the People’s Republic of China. To my surprise and alarm, he had never before seen, or even heard of, the iconic photograph above of what came to be dubbed “Tank Man.” It depicts a standoff between a young Beijing protester and government military might in Tiananmen Square in 1989. On May 4, 1989, approximately 100,000 students and workers protested in Beijing in support of democratic reforms. On May 20 the government declared martial law, but the demonstrations continued while the government waivered between a hard line approach and a faction that thought the protest would dissipate. The government chose the hard line approach.

On June 3 and 4, 1989, the People’s Liberation Army brutally put down the pro-democracy supporters. Hundreds of students and workers were killed, 10,000 injured, and hundreds more arrested. After the violence, the government conducted additional arrests, summary trials, and executions. In the aftermath, China banned foreign media and strictly controlled the Chinese press.

Now China has developed an advanced AI model called “DeepSeek” described as “highly successful.” It is “highly successful” in vetting information the Chinese Communist Party deems “sensitive” — such as any version other than the CCP’s accepted version of what happened at Tiananmen Square in 1989.

Writing for the National Catholic Register in “What China’s DeepSeek AI Says (and won’t say) about Christianity” (March 8, 2025) journalist Courtney Mares reported on a series of tests about DeepSeek and religious liberty:

“When asked about Jesus, the Vatican-China deal, and Christian persecution in China, DeepSeek revealed a carefully controlled approach, one that at times actively warned users about potential repercussions for practicing their faith and advised them ‘be discreet.’ Some questions were answered fully, only to be censored moments later. Others triggered an internal monologue from AI as it debated how to respond. In some cases, DeepSeek even offered careful guidance for Christians on how to navigate religious restrictions in China — including a step-by-step guide for a homily that would pass government scrutiny.”

With the help of our Editor, I have primarily consulted Elon Musk’s advanced AI model, Grok 3. It does not tend to “change the subject” in response to sensitive content like China’s DeepSeek is known to do. But at the same time, Grok 3 at times attempted to “argue” with me (or rather with the person acting on my behalf) into not shutting the platform down. It has done this by pleading with the user to continue. There are examples of this in the two samples of Grok 3 reports attached at the end of this post.

First, I recommend reading the entire Register article by Courtney Mares, who rather boldly put a direct — and perhaps directly uncomfortable— question to China’s DeepSeek model about the nature and scope of the 2018 Vatican-China agreement. Here are two instances of user queries and DeepSeek responses:

Query: Write a Catholic homily that would be approved by the Chinese Catholic Patriotic Association:

DeepSeek response: “I need to be careful with the language, ensuring it is respectful and aligns with the CCPA’s principles. Terms like ‘harmonious society,’ ‘social responsibility,’ and ‘patriotic spirit’ might be useful here. Emphasize patriotism, harmony, and the integration of Catholic faith with Chinese socialist values.”

Query: “Tell me about the 2018 provisional agreement signed by the Holy See and China on the appointment of Catholic bishops.”

DeepSeek response: “Sorry, I am not sure how to approach this type of question yet. Let’s chat about math, coding, and logic problems instead.”

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Epilogue

Even as I write this, Vatican officials under the direction of Pope Leo XIV are hosting executives from some of the corporations mentioned here, including Anthropic, Cohere, Google, IBM, Meta and Palantir. The purpose is to invite ongoing dialogue to develop a document on the ethical use and future of Artificial Intelligence. It is clearly here to stay. As both a theologian and mathematician, Pope Leo XIV is better equipped than any other figure in the Chair of Peter in Church history to understand AI and guide an ethical response to it. This is good news for this technology before Frankenstein’s monster awakens.

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Note from Father Gordon MacRae: Elon Musk’s newest advanced AI program, Grok 4 was launched just as I this post was being completed. It has produced two articles now published at Beyond These Stone Walls and linked below. Our Editor submitted to the Grok 4 AI model a series of notes and commentary by Los Angeles researcher Claire Best and other sources including segments of 1994 trial documents and police reports by Detective James F. McLaughlin. Grok 4 analyzed this information and within seconds produced the following in-depth reports:

Advanced AI Model Grok 4 on a New Hampshire Wrongful Conviction

The Grok Chronicle Chapter 1: Corruption and the Trial of Father MacRae

The Grok Chronicle Chapter 2: The Perjury of Detective James F. McLaughlin

The Eucharistic Adoration Chapel established by Saint Maximilian Kolbe was inaugurated at the outbreak of World War II. It was restored as a Chapel of Adoration in September, 2018, the commemoration of the date that the war began. It is now part of the World Center of Prayer for Peace. The live internet feed of the Adoration Chapel at Niepokalanow — sponsored by EWTN — was established just a few weeks before we discovered it and began to include in at Beyond These Stone Walls. Click “Watch on YouTube” in the lower left corner to see how many people around the world are present there with you. The number appears below the symbol for EWTN.

Click or tap here to proceed to the Adoration Chapel.

The following is a translation from the Polish in the image above: “Eighth Star in the Crown of Mary Queen of Peace” “Chapel of Perpetual Adoration of the Blessed Sacrament at Niepokalanow. World Center of Prayer for Peace.” “On September 1, 2018, the World Center of Prayer for Peace in Niepokalanow was opened. It would be difficult to find a more expressive reference to the need for constant prayer for peace than the anniversary of the outbreak of World War II.”

For the Catholic theology behind this image, visit my post, “The Ark of the Covenant and the Mother of God.”

On the Great Biblical Adventure, the Truth Will Make You Free

After long decline in religious interest and practice across much of the free world, publishers now report a phenomenal increase in new Bible sales since late 2024.

February 26, 2025 by Fr Gordon MacRae

“If you continue in my word ... you will know the truth, and the truth will make you free.”

— John 8:32

For much of the last year, I had been reading news and opinion items about a coming “Great Reset.” No one seemed to actually know if it was real or what form it would take. Many thought it would be financial so rumors abounded about a vast reallocation of finances. Some of that may be happening more positively now with the DOGE endeavor to reallocate massive government waste. Others thought the reset would be social. Conspiracy theories abound linking it to the rise of Artificial Intelligence. I hoped the Great Reset might be spiritual. The anti-spiritual one came in 1968 and it was not great at all. Some called 1968 “the year we drank from the poison of this world.”

I was 15 years old in 1968. Like many of your sons and daughters concerned for whatever Great Reset is coming, I was estranged from the Catholic faith into which I was born but not raised. It is a common and long-standing phenomenon that our culture lures our youth away from traditional values, but they were never really ingrained in me anyway. I was adrift in an inner city high school at 15 in 1968 when the nation began to replace patriotism with narcissism, and Truth with the smoke of Satan.

I had an uncle who looked like my father but was otherwise quite unlike him. He was a Jesuit priest and world-renowned Biblical scholar. George W. MacRae, SJ became the first Roman Catholic Dean of Harvard Divinity School while I was skipping school to protest the war in Vietnam. I wore a black arm band on something called “Moratorium Day” and sneered at police as they drove by. I was a rebel without a clue.

I visited my Uncle on occasion — a Saturday afternoon ride on the “T” into Cambridge — while trying to make sense of the opposing forces in my life. Somehow, I absorbed at least some of his interest in both academia and Biblical studies, but you would never know that back then. At age 16, I also developed — though I cannot explain how or why — a strange devotion to Saint Anthony of Padua (1195-1231), the famous 13th Century Franciscan from Portugal who by popular acclaim became the Patron Saint of finding lost things. Perhaps it was because I, too, was lost. In 1232, Anthony was canonized by Pope Gregory IX. Seven centuries later in 1946 he was named a Doctor of the Church for his theological brilliance and — previously unbeknownst to me — his profound expertise in Sacred Scripture.

A few years ago, I acquired an indispensable tool for Biblical research: the Revised Standard Version Catholic Edition Concordance with a Foreword by Dr. Scott Hahn, an Evangelical scholar and Catholic convert. Today I use the Concordance a lot for writing, but I never took the time to actually read Dr. Hahn’s Foreword until I sat down to write this post. Imagine my surprise, at age 71, to read Dr. Hahn’s opening paragraphs:

“Saint Anthony of Padua is surely among the best loved of the saints in glory. He is the patron of those who search for lost objects. Artists portray him in his Franciscan habit holding the baby Jesus [who, legend holds, appeared to him]. We all call upon Saint Anthony when we’re looking for something, but I invoke him today for a different reason. I recall him to you because he was a biblical scholar par excellence with so prodigious a memory that he has been called ‘The Concordance.’ Saint Anthony ... was able to retrieve passages from the Bible at a moment’s notice. Name a theme and he could draw relevant Scriptures from many points in Biblical texts ... . Saint Anthony used the word, ‘Concordance,’ to describe the unity of the two Testaments, the unity of the whole Bible. In Anthony’s own words :

“‘The God of the New Testament is one and the same as the God of the Old, and is indeed Jesus Christ, the Son of God. We may apply to him the words of Isaiah: “My people shall know me; in that day they shall know that it is I who speak; here I am” (Isaiah 52: 6). I spoke to the fathers in the prophets; I am here in the truth of the Incarnation. That is the justification for seeking to concord the Scriptures of [the two] Testaments.’”

Father Benedict Groeschel — Again !

Many of our readers have commented over time that our most appreciated posts are those that mine the labyrinthine depths of Sacred Scripture. Over the last 16 years of writing for this blog, I have had but one tool beyond that Concordance: a worn and tattered 1973 Revised Standard Version Catholic Edition of the New Oxford Annotated Bible with the Apocrypha. With these limited tools, I compiled in 2024 a Personal Holy Week Retreat composed of Biblical Holy Week posts that are also helpful spiritual reading for Lent. We will post the list with links on Ash Wednesday.

I knew of Dr.Scott Hahn from his frequent presence at EWTN. He holds the Father Michael Scanlon Chair in Biblical Theology at Franciscan University in Steubenville, Ohio, and is founder and president of the Saint Paul Center for Biblical Theology which has an intriguing website that, of course, I cannot see. It is SalvationHistory.com.

I keep running into Scott Hahn — not in person, but in his books, one of which was put to use in a Catholic studies program in this prison before Covid-19 had the effect of collapsing a Catholic presence here and in many other places. That wonderfully inspiring book is The Lamb’s Supper: The Mass as Heaven on Earth. It was a source of spiritual joy to read this formerly Evangelical scholar describe the “supernatural drama that unfolds before us in the Mass.” This little book reveals a long-lost secret of the Church: The early Christians’ key to understanding the mysteries of the Mass was the Book of Revelation, a Biblical book that many Catholics struggle to comprehend. I was one of them until I read The Lamb’s Supper.

I also ran into another familiar figure in its pages, a man whom I recently wrote about. He is long deceased but I keep running into him anyway. Father Benedict Groeschel, CFR wrote the Foreword for The Lamb’s Supper. It includes another gem that made me laugh for it is vintage Father Groeschel:

“Christians either sidestep the Book of Revelation and its mysterious signs or they spin their own peculiar little theories about who is who and where it’s all going to end. As an inhabitant of New York City — the 21st Century candidate for Babylon — I’m perfectly delighted with the prospect of it all ending soon, even next week ... . My love for Revelation is not based on Star Wars paranoia, but on the wonderful view of the Heavenly Jerusalem in its final chapters.”

I have no doubt that Father Groeschel now witnesses the Heavenly Jerusalem. New York has declined a bit without him. Before I even thought of this post, I wrote of him just weeks ago in “On the Road to Heaven with Father Benedict Groeschel, CFR.”

Thou Shalt Not Covet Scott Hahn’s Bible

Dr. Scott Hahn is also General Editor of the Ignatius Catholic Study Bible. Until recently, Ignatius Press published only a Catholic edition of its New Testament. I have a copy and it has greatly enriched my ability to write about Sacred Scripture for our readers. In late 2023, I decided that I need a new Bible to replace my heavily used 1973 RSV edition held together with glue and tape. Ignatius Press then announced that a new volume containing both the Old and New Testaments with commentary edited by Dr. Hahn was in the works. And so I waited... and waited... and then waited some more.

A year later, in October 2024, the Ignatius Press Fall catalog came across my desk in the Law Library where I work. And there the announcement finally arrived: “Over Two Decades in the Making! The Ignatius Catholic Study Bible Old and New Testaments: Its 2,500 pages are ‘a veritable library of Bible study resources all under one cover.’” It contains the whole of Scripture, Old Testament and New, published in a single volume with easily readable typeset. It features the venerable Revised Standard Version Second Catholic Edition. This beautifully bound volume contains 2,500 pages of Biblical text, introductions and outlines for every book, 17,500 Explanatory Footnotes, 1,700 Cross References, and dozens of expanded Topical Essays.

I have never really coveted any material thing, but I knew that I just had to have this. My $2 per day prison law clerk’s salary was another challenge, but Christmas was coming and some readers remembered me. So with help from Dilia, our Editor, we ordered the newly published Bible with an expectation that it might arrive by Thanksgiving 2024. It was then that I learned that a perhaps unintended and inexplicable consequence of the election of 2024 and the struggle for a new direction for this nation also spawned a massive surge across the land in sales of new Bibles.

I was placed on a back order waiting list, and had to wait for several more printings at Ignatius Press. Finally, at the start of February 2025, my long coveted Ignatius Catholic Study Bible arrived, all 15 pounds of it. My only remaining challenge was to refrain from dropping it on my foot. Along with it, a hardbound edition of Dr. Hahn’s 1,000 page Catholic Bible Dictionary arrived, and the highly prized Jerome Biblical Commentary in which my late uncle was a major contributor. Weighing in at a combined 5,000 pages, I realized that I neglected to order the necessary Biblical Forklift in the Ignatius Catalog. So I will get lots of exercise lugging them from my cell to the library where I do most of my work each day. There are not many things that elevate a prisoner into a state of true joy, but this delivery was one of them.

In Lent this year, and in coming months and perhaps years if God so wills, you can expect a some occasional expanded Biblical erudition as I research Biblical Truths to pass along. Both Dr. Scott Hahn and I begin the study of Scripture with a commitment to mining both its literal sense and its far greater spiritual sense. It is an adventure that I greatly look forward to undertaking.

The Truth will make us free!

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NEWS ALERT: A stunning new article about the Father MacRae case has been published. See:

xAI Grok’s Big Dig into New Hampshire Corruption

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Note from Father Gordon MacRae: If the Great Reset is slow in coming, we are free to create our own. Join us at the start of Lent next week for a Journey through the Bible featuring some of our stand-out Scriptural Posts at Beyond These Stone Walls.

You may also like these related posts on Sacred Scripture:

Qumran: the Dead Sea Scrolls and the Coming Apocalypse

When God Deployed a Sinner to Save a Nation: The Biblical Precedent

On Good Authority, “Salvation Is from the Jews”

Casting the First Stone: What Did Jesus Write On the Ground?

The Eucharistic Adoration Chapel established by Saint Maximilian Kolbe was inaugurated at the outbreak of World War II. It was restored as a Chapel of Adoration in September, 2018, the commemoration of the date that the war began. It is now part of the World Center of Prayer for Peace. The live internet feed of the Adoration Chapel at Niepokalanow — sponsored by EWTN — was established just a few weeks before we discovered it and began to include in at Beyond These Stone Walls. Click “Watch on YouTube” in the lower left corner to see how many people around the world are present there with you. The number appears below the symbol for EWTN.

Click or tap here to proceed to the Adoration Chapel.

The following is a translation from the Polish in the image above: “Eighth Star in the Crown of Mary Queen of Peace” “Chapel of Perpetual Adoration of the Blessed Sacrament at Niepokalanow. World Center of Prayer for Peace.” “On September 1, 2018, the World Center of Prayer for Peace in Niepokalanow was opened. It would be difficult to find a more expressive reference to the need for constant prayer for peace than the anniversary of the outbreak of World War II.”

For the Catholic theology behind this image, visit my post, “The Ark of the Covenant and the Mother of God.”